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Principles of Nucleic Acid Structure

Principles of Nucleic Acid Structure
Author : Stephen Neidle
Publisher : Elsevier
Release Date : 2010-07-26
Category : Science
Total pages :302
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This unique and practical resource provides the most complete and concise summary of underlying principles and approaches to studying nucleic acid structure, including discussion of x-ray crystallography, NMR, molecular modelling, and databases. Its focus is on a survey of structures especially important for biomedical research and pharmacological applications. To aid novices, Principles of Nucleic Acid Structure includes an introduction to technical lingo used to describe nucleic acid structure and conformations (roll, slide, twist, buckle, etc.). This completely updated edition features expanded coverage of the latest advances relevant to recognition of DNA and RNA by small molecules and proteins. In particular, the reader will find extensive new discussions on: RNA folding, ribosome structure and antibiotic interactions, DNA quadruplexes, DNA and RNA protein complexes, and short interfering RNA (siRNA). This handy guide ends with a complete list of resources, including relevant online databases and software. Completely updated with expanded discussion of topics such as RNA folding, ribosome structure and antibiotic interactions, DNA quadruplexes, DNA and RNA protein complexes, and short interfering RNA (siRNA) Includes a complete list of resources, including relevant online databases and software Defines technical lingo for novices

Principles of Nucleic Acid Structure

Principles of Nucleic Acid Structure
Author : Wolfram Saenger
Publisher : Springer Science & Business Media
Release Date : 2013-12-01
Category : Science
Total pages :556
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New textbooks at all levels of chemistry appear with great regularity. Some fields like basic biochemistry, organic reaction mechanisms, and chemical ther modynamics are well represented by many excellent texts, and new or revised editions are published sufficiently often to keep up with progress in research. However, some areas of chemistry, especially many of those taught at the grad uate level, suffer from a real lack of up-to-date textbooks. The most serious needs occur in fields that are rapidly changing. Textbooks in these subjects usually have to be written by scientists actually involved in the research which is advancing the field. It is not often easy to persuade such individuals to set time aside to help spread the knowledge they have accumulated. Our goal, in this series, is to pinpoint areas of chemistry where recent progress has outpaced what is covered in any available textbooks, and then seek out and persuade experts in these fields to produce relatively concise but instructive introductions to their fields. These should serve the needs of one semester or one quarter graduate courses in chemistry and biochemistry. In some cases the availability of texts in active research areas should help stimulate the creation of new courses. CHARLES R. CANTOR New York Preface This monograph is based on a review on polynucleotide structures written for a book series in 1976.

Physical Principles in Nucleic Acid Chemistry

Physical Principles in Nucleic Acid Chemistry
Author : David E. Draper
Publisher : CRC PressI Llc
Release Date : 2014-12-15
Category : Medical
Total pages :450
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Nucleic Acid Structure and Recognition

Nucleic Acid Structure and Recognition
Author : Cancer Research Campaign Biomolecular Structure Unit Stephen Neidle,Stephen Neidle
Publisher : Oxford University Press, USA
Release Date : 2002
Category : Science
Total pages :188
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This book provides a detailed view of the molecular structures of DNA and RNA and how they are recognised by small molecules and proteins. Extensive source material is provided, including information on relevant web sites and computer programmes. The major methods of structural investigationfor nucleic acids: X-ray crystallography, NMR, and molecular modelling are reviewed and their scope and limitations (in the context of nucleic acids) discussed. Also covered are the conformational features of nucleic acid building blocks, including a description of how base-pair morphologies areanalysed; the structures of DNA double helices and helical oligonucleotides, emphasising current ideas on sequence-dependent structure; and DNA-DNA interactions, including triplexes and quadruplexes. The principles of RNA folding, ribosome, and ribozyme structure are also surveyed. Both covalent andnon-covalent nucleic acid interactions with small molecules are described, with the emphasis on recognition principles and sequence specific gene recognition. The principles of protein - nucleic acid are covered, focussing on regulatory proteins.Nucleic Acid Structure and Recognition will therefore equip readers with a good understanding of all the important aspects of this major field.The Nucleic Acid Database (NDB) crystallographic and NMR structures for the nucleic acid structures described in the book are freely available through the Nucleic Acid Structure and Recognition website.


Author : Taylor & Francis Group
Publisher : Garland Science
Release Date : 2010-12-31
Category :
Total pages :129
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Principles and Practice of Experiments with Nucleic Acids

Principles and Practice of Experiments with Nucleic Acids
Author : John Howard Parish
Publisher : Unknown
Release Date : 1972
Category : Biochemistry
Total pages :511
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Nucleic acid components; Isolation; Fractionation; Identification; Degradation; Synthesis; Chemical reactions; Primary structure of DNA and RNA; Secondary structure; Hybridization; Size and shape; Interaction between nucleic acids and small molecules; Tertiary structure; Interaction between nucleic acids and proteins.

Computational studies of RNA and DNA

Computational studies of RNA and DNA
Author : Jirí Šponer,Filip Lankaš
Publisher : Springer Science & Business Media
Release Date : 2006-10-05
Category : Science
Total pages :638
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This book integrates modern computational studies of nucleic acids, ranging from advanced electronic structure quantum chemical calculations through explicit solvent molecular dynamics (MD) simulations up to mesoscopic modelling, with the main focus given to the MD field. It gives an equal emphasis to the leading methods and applications while successes as well as pitfalls of the computational techniques are discussed.

RNA Structure and Function

RNA Structure and Function
Author : Robert W. Simons 1945-.,Robert W. Simons,Marianne Grunberg-Manago
Publisher : Unknown
Release Date : 1998
Category : Science
Total pages :741
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The striking functional versatility of RNA is attributable to its remarkable capacity for conformational change. Current models of RNA synthesis, its maturation, translation and degradation are all based on specific structures and there is growing appreciation of the functional importance of interactions between RNA and RNA-binding proteins. This work identifies the major intellectual and technical advances in understanding the part played by structure in how RNA works. It encompasses the experimental approaches used to define RNA structure and its influence on RNA functions such as transcription termination, catalysis, recoding and translational control. Investigators with these interests and students of molecular biology should find this volume a provocative survey of a rapidly-advancing field and a valuable complement to the monograph, The RNA World.

Scientific and Technical Aerospace Reports

Scientific and Technical Aerospace Reports
Author : Anonim
Publisher : Unknown
Release Date : 1986
Category : Aeronautics
Total pages :129
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Protein-Nucleic Acid Interactions

Protein-Nucleic Acid Interactions
Author : Phoebe A. Rice,Carl C. Correll
Publisher : Royal Society of Chemistry
Release Date : 2008-05-22
Category : Science
Total pages :397
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The structural biology of protein-nucleic acid interactions is in some ways a mature field and in others in its infancy. High-resolution structures of protein-DNA complexes have been studied since the mid 1980s and a vast array of such structures has now been determined, but surprising and novel structures still appear quite frequently. High-resolution structures of protein-RNA complexes were relatively rare until the last decade. Propelled by advances in technology as well as the realization of RNA's importance to biology, the number of example structures has ballooned in recent years. New insights are now being gained from comparative studies only recently made possible due to the size of the database, as well as from careful biochemical and biophysical studies. As a result of the explosion of research in this area, it is no longer possible to write a comprehensive review. Instead, current review articles tend to focus on particular subtopics of interest. This makes it difficult for newcomers to the field to attain a solid understanding of the basics. One goal of this book is therefore to provide in-depth discussions of the fundamental principles of protein-nucleic acid interactions as well as to illustrate those fundamentals with up-to-date and fascinating examples for those who already possess some familiarity with the field. The book also aims to bridge the gap between the DNA- and the RNA- views of nucleic acid - protein recognition, which are often treated as separate fields. However, this is a false dichotomy because protein - DNA and protein - RNA interactions share many general principles. This book therefore includes relevant examples from both sides, and frames discussions of the fundamentals in terms that are relevant to both. The monograph approaches the study of protein-nucleic acid interactions in two distinctive ways. First, DNA-protein and RNA-protein interactions are presented together. Second, the first half of the book develops the principles of protein-nucleic acid recognition, whereas the second half applies these to more specialized topics. Both halves are illustrated with important real life examples. The first half of the book develops fundamental principles necessary to understand function. An introductory chapter by the editors reviews the basics of nucleic acid structure. Jen-Jacobsen and Jacobsen discuss how solvent interactions play an important role in recognition, illustrated with extensive thermodynamic data on restriction enzymes. Marmorstein and Hong introduce the zoology of the DNA binding domains found in transcription factors, and describe the combinational recognition strategies used by many multiprotein eukaryotic complexes. Two chapters discuss indirect readout of DNA sequence in detail: Berman and Lawson explain the basic principles and illustrate them with in-depth studies of CAP, while in their chapter on DNA bending and compaction Johnson, Stella and Heiss highlight the intrinsic connections between DNA bending and indirect readout. Horvath lays out the fundamentals of protein recognition of single stranded DNA and single stranded RNA, and describes how they apply in a detailed analysis of telomere end binding proteins. Nucleic acids adopt more complex structures - Lilley describes the conformational properties of helical junctions, and how proteins recognize and cleave them. Because RNA readily folds due to the stabilizing role of its 2'-hydroxyl groups, Li discusses how proteins recognize different RNA folds, which include duplex RNA. With the fundamentals laid out, discussion turns to more specialized examples taken from important aspects of nucleic acid metabolism. Schroeder discusses how proteins chaperone RNA by rearranging its structure into a functional form. Berger and Dong discuss how topoisomerases alter the topology of DNA and relieve the superhelical tension introduced by other processes such as replication and transcription. Dyda and Hickman show how DNA transposes mediate genetic mobility and Van Duyne discusses how site-specific recombinases "cut" and "paste" DNA. Horton presents a comprehensive review of the structural families and chemical mechanisms of DNA nucleases, whereas Li in her discussion of RNA-protein recognition also covers RNA nucleases. Lastly, FerrÚ-D'AmarÚ shows how proteins recognize and modify RNA transcripts at specific sites. The book also emphasises the impact of structural biology on understanding how proteins interact with nucleic acids and it is intended for advanced students and established scientists wishing to broaden their horizons.

Quasispecies and RNA Virus Evolution

Quasispecies and RNA Virus Evolution
Author : Esteban Domingo
Publisher : CRC Press
Release Date : 2001
Category : Medical
Total pages :173
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This book focuses on a new aspect of RNA virology: the highly dynamic, heterogeneous and plastic nature of RNA viruses which comprise more than 75% of the viruses that have been recognized as disease agents. It is the first attempt to bridge the gap from the basic, theoretical formulations underlying error-prone replications and generation of quasispecies, to their impact on how RNA viruses adapt and cause disease.

DNA Structure and Recognition

DNA Structure and Recognition
Author : Cancer Research Campaign Biomolecular Structure Unit Stephen Neidle,Stephen Neidle
Publisher : Oxford University Press, USA
Release Date : 1994
Category : DNA
Total pages :108
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This book is a concise, comprehensive survey of DNA structure, from first principles to the ways in which drugs and proteins interact with DNA. Such an understanding of DNA structure is essential for more detailed study in areas such as gene regulation and DNA-targeted drug action.

Protein-nucleic Acid Interaction

Protein-nucleic Acid Interaction
Author : Wolfram Saenger,Udo Heinemann
Publisher : CRC PressI Llc
Release Date : 1989
Category : Medical
Total pages :209
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Realistic Simulation of Nucleic Acids in Solution

Realistic Simulation of Nucleic Acids in Solution
Author : Thomas Edward Cheatham
Publisher : Unknown
Release Date : 1997
Category : Molecular dynamics
Total pages :524
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Fourteenth Symposium on Nucleic Acids Chemistry

Fourteenth Symposium on Nucleic Acids Chemistry
Author : Mikio Honjo
Publisher : Irl Press
Release Date : 1986
Category : Science
Total pages :232
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